Bpipe
Overview
Introduction
Comparison To Workflow Tools
Install Instructions
Language
About
Check
Chr
Cleanup
Config
Debug
Directories
Doc
Exec
Fail
File
Filter
Forward
From
Glob
Grep
Load
Merge Point Operator
Multi
Output
Options
Prefix
Produce
R
Segments
Send
Succeed
Transform
Using
Preserve in pipeline
requires
uses
var
Commands
Using the bpipe command
cleanup
execute
history
jobs
log
preserve
query
retry
run
status
stop
test
Tutorials
Hello, World
Example With Inputs And Outputs
Real Pipeline Tutorial
Guides
Configuration Support
Variables
Parallel Tasks
Branch Variables
Extension Syntax
Logging
Modules
Notifications
Working with Genomic Regions
Reports
Resource Managers
Tool Version Database
Trash
Development Setup
Documentation Style
Implementing A Resource Manager
Troubleshooting
Listening for Pipeline Events
Advanced Settings
Adding to Class Path
Pre-allocating Resources for Jobs
Integration with Gitlab
Integration with JMS / Queuing Systems
Using Bpipe with Amazon Web Services (AWS/EC2)
Using Bpipe with Google Cloud (GCS)
Running Commands in Containers
Examples
Paired End Alignment
RNA Seq Corset
WGS Variant Calling
Releases
0.9.11 (latest)
0.9.10
0.9.9.9
0.9.9.8
0.9.9.7
0.9.9.6
0.9.9.5
0.9.9.4
0.9.9.3
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Edit on GitHub
The async statement
The async statement
Synopsis
Behavior
Logging
Failure
Examples
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