Bpipe Version 0.9.9.4

Download: bpipe-0.9.9.4.tar.gz

Summary

This is a quick update that bundles a few new features with some critical fixes to 0.9.9.3 based on feedback after it was released.

Changes

  • Fix issue #217
  • Add bpipe stats command to show runtimes of stages
  • Support config of concurrency limit in bpipe.config, via concurrency=\<n>
    • Support for embedding config inside pipeline scripts via 'config' statement
    • Fix command status sometimes incorrect after stop preallocated
    • Fix pool commands in WAITING status not recognised as active
    • Fix trailing output from commands sometimes missing when output appears very fast at point where command terminates