The cleanup statement

Synopsis

  config { ... configuration }

Availability

  0.9.9.4+

Behavior

The config statement allows configuration of Bpipe from inside a pipeline script. Please note that some aspects of configuration are already acted upon by Bpipe before this is read, so not every configuration attribute can be modified.

Examples

Configure to use different memory for large data vs small

large_data=true

config {
    executor="torque"
    memory=large_data ? "24g" : "12g"
}